Dssp database download

Mar 11, Apr 3, View code. Development Download and installation instructions Compiling dssp programs Pre-requisites Instructions to build in Docker Instructions for installing mkdssp locally Citing dssp Contact. Development The provided Dockerfile sets up a development environment.

Download and installation instructions Pre-compiled old versions of DSSP are available from the old repository. From the repository, run: docker-compose build.

Krieger, Robbie P. Joosten and Gert Vriend. Acids Res. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Kabsch W and Sander C, Biopolymers 22, Database of homology-derived protein structures and the structural meaning of sequence alignment. Sander C and Schneider R, Proteins 9, Extract from 1est.

First column is DSSP's sequential residue number, starting at the first residue actually in the data set and including chain breaks; this number is used to refer to residues throughout.

Second column gives crystallographers' 'residue sequence number','insertion code' and 'chain identifier' see protein data bank file record format manual , given for reference only. So in case cysteines are bridged, then the first bridged cysteine in the sequence and its partner where-ever else in the sequence it is, both become a lower case character a. The next bridged cysteine that is not yet converted into lower case and its partner both become a lower case character b , etcetera.

There are two columns for each type of H-bond, to allow for bifurcated H-bonds. Not used for structure definition. Used to define bend structure code 'S'. Also, in mmCIF files these ids can be longer than one character. Warnings The values for solvent exposure may not mean what you think:.

From the July version onwards, the output format got three new features for details, see below. The continuous DSSP assignments calculated from a single set of coordinates reflect the structural variations due to thermal fluctuations. Please note that the DSSPcont server is currently offline. If you need to use this program please see the Download section.

Alternatively, you can perform the same process, by using our SRS server. You can search this database in other ways also. Upload a file Enter a file name into the second box, including the full path of the file. Alternatively click on 'Browse' to search your local directory structure for the file. Be careful to include everything.